82 search results - page 2 / 17 » A genome alignment algorithm based on compression |
RECOMB
2006
Springer
14 years 5 months ago
2006
Springer
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
BIBE
2005
IEEE
13 years 11 months ago
2005
IEEE
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
GCB
2006
Springer
13 years 9 months ago
2006
Springer
: Despite many years of research on how to properly align sequences in the presence of sequencing errors, alternative splicing and micro-exons, the correct alignment of mRNA sequen...
BMCBI
2007
13 years 5 months ago
2007
Background: Accurate identification of novel, functional noncoding (nc) RNA features in genome sequence has proven more difficult than for exons. Current algorithms identify and s...
RECOMB
2003
Springer
14 years 5 months ago
2003
Springer
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...