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BMCBI
2010
121views more  BMCBI 2010»
13 years 3 months ago
Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites
Background: DNA instability profiles have been used recently for predicting the transcriptional start site and the location of core promoters, and to gain insight into promoter ac...
Miriam R. Kantorovitz, Zoi Rapti, Vladimir Gelev, ...
ASPDAC
2010
ACM
637views Hardware» more  ASPDAC 2010»
13 years 3 months ago
A new graph-theoretic, multi-objective layout decomposition framework for double patterning lithography
As Double Patterning Lithography(DPL) becomes the leading candidate for sub-30nm lithography process, we need a fast and lithography friendly decomposition framework. In this pape...
Jae-Seok Yang, Katrina Lu, Minsik Cho, Kun Yuan, D...
DATE
2004
IEEE
175views Hardware» more  DATE 2004»
13 years 9 months ago
Breaking Instance-Independent Symmetries in Exact Graph Coloring
Code optimization and high level synthesis can be posed as constraint satisfaction and optimization problems, such as graph coloring used in register allocation. Graph coloring is...
Arathi Ramani, Fadi A. Aloul, Igor L. Markov, Kare...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 9 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara