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AB
2008
Springer
13 years 11 months ago
Algorithms for Inference, Analysis and Control of Boolean Networks
Boolean networks (BNs) are known as a mathematical model of genetic networks. In this paper, we overview algorithmic aspects of inference, analysis and control of BNs while focusin...
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamur...
TNN
2010
147views Management» more  TNN 2010»
12 years 11 months ago
State-space analysis of Boolean networks
This paper provides a comprehensive framework for the state space approach to Boolean networks. First, it surveys the authors' recent work on the topic: Using semitensor produ...
Daizhan Cheng, Hongsheng Qi
BIOINFORMATICS
2005
152views more  BIOINFORMATICS 2005»
13 years 4 months ago
Intervention in context-sensitive probabilistic Boolean networks
Motivation: Intervention in a gene regulatory network is used to help it avoid undesirable states, such as those associated with a disease. Several types of intervention have been...
Ranadip Pal, Aniruddha Datta, Michael L. Bittner, ...
BMCBI
2007
197views more  BMCBI 2007»
13 years 4 months ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
ISBRA
2010
Springer
13 years 3 months ago
Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data
A popular model for gene regulatory networks is the Boolean network model. In this paper, we propose an algorithm to perform an analysis of gene regulatory interactions using the B...
Carlos H. A. Higa, Vitor H. P. Louzada, Ronaldo Fu...