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BMCBI
2007
136views more  BMCBI 2007»
13 years 5 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
AAAI
2008
13 years 7 months ago
Cross-lingual Propagation for Morphological Analysis
Multilingual parallel text corpora provide a powerful means for propagating linguistic knowledge across languages. We present a model which jointly learns linguistic structure for...
Benjamin Snyder, Regina Barzilay
BIBM
2008
IEEE
142views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Using Global Sequence Similarity to Enhance Biological Sequence Labeling
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...
Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasa...
BMCBI
2010
155views more  BMCBI 2010»
13 years 5 months ago
A flexible R package for nonnegative matrix factorization
Background: Nonnegative Matrix Factorization (NMF) is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face re...
Renaud Gaujoux, Cathal Seoighe
JMLR
2010
192views more  JMLR 2010»
13 years 2 days ago
Inducing Tree-Substitution Grammars
Inducing a grammar from text has proven to be a notoriously challenging learning task despite decades of research. The primary reason for its difficulty is that in order to induce...
Trevor Cohn, Phil Blunsom, Sharon Goldwater