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CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
13 years 11 months ago
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems
The genome projects have provided comprehensive information about the basic building blocks of life. The next challenge is to understand how biological functions emerge from compl...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
DAGSTUHL
2006
13 years 6 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
13 years 10 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
ISBI
2009
IEEE
14 years 7 days ago
A Compressed Sensing Approach for Biological Microscopic Image Processing
In fluorescence microscopy the noise level and the photobleaching are cross-dependent problems since reducing exposure time to reduce photobleaching degrades image quality while ...
Marcio de Moraes Marim, Elsa D. Angelini, Jean-Chr...
RECOMB
2002
Springer
14 years 5 months ago
Simulating a Coalescent Process with Recombination and Ascertainment
A new method is presented for use in simulating samples of disease and normal chromosomes bearing multiple linked genetic markers under a neutral model of mutation, genetic drift, ...
Ying Wang, Bruce Rannala