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RECOMB
2006
Springer
14 years 6 months ago
Integrated Protein Interaction Networks for 11 Microbes
We have combined four different types of functional genomic data to create high coverage protein interaction networks for 11 microbes. Our integration algorithm naturally handles s...
Balaji S. Srinivasan, Antal F. Novak, Jason Flanni...
BMCBI
2011
12 years 9 months ago
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Background: Combining multiple evidence-types from different information sources has the potential to reveal new relationships in biological systems. The integrated information ca...
Artem Lysenko, Michael Defoin-Platel, Keywan Hassa...
PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
14 years 9 days ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
ICASSP
2007
IEEE
14 years 2 days ago
Genomic Network Tomography
This paper considers the problem of learning cellular signaling networks from incomplete measurements of pathway activity. Cells respond to environmental changes (e.g., starvation...
Michael G. Rabbat, Mário A. T. Figueiredo, ...
BMCBI
2006
108views more  BMCBI 2006»
13 years 5 months ago
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
Background: The regulatory map of a genome consists of the binding sites for proteins that determine the transcription of nearby genes. An initial regulatory map for S. cerevisiae...
Kenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon,...