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» Domain Identification by Clustering Sequence Alignments
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ASWEC
2008
IEEE
13 years 6 months ago
Root Cause Analysis Using Sequence Alignment and Latent Semantic Indexing
Automatic identification of software faults has enormous practical significance. This requires characterizing program execution behavior. Equally important is the aspect of diagno...
R. P. Jagadeesh Chandra Bose, U. Suresh
BMCBI
2005
198views more  BMCBI 2005»
13 years 4 months ago
Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
BMCBI
2010
177views more  BMCBI 2010»
13 years 5 months ago
Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman
NAR
2007
128views more  NAR 2007»
13 years 4 months ago
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...