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» Exact sequences for the homology of the matching complex
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WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 23 days ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
14 years 19 days ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan
AMW
2009
13 years 7 months ago
Identifying Algebraic Properties to Support Optimization of Unary Similarity Queries
Conventional operators for data retrieval are either based on exact matching or on total order relationship among elements. Neither of them is appropriate to manage complex data, s...
Mônica Ribeiro Porto Ferreira, Agma J. M. Tr...
LATA
2010
Springer
13 years 11 months ago
A Randomized Numerical Aligner (rNA)
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...
Alberto Policriti, Alexandru I. Tomescu, Francesco...
BMCBI
2007
131views more  BMCBI 2007»
13 years 6 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini