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BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
13 years 5 months ago
GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and Specificity
  The  latest  developments  in  DNA  sequencing  tech­  niques paved the way for tremendous increase in bio­  logical databases. Once the whole DNA sequen...
M. A. Lijo Anto, G. Gopakumar, Achuthsankar S. Nai...
BMCBI
2010
153views more  BMCBI 2010»
13 years 3 months ago
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules
Background: Large microarray datasets have enabled gene regulation to be studied through coexpression analysis. While numerous methods have been developed for identifying differen...
Bruno M. Tesson, Rainer Breitling, Ritsert C. Jans...
BMCBI
2007
152views more  BMCBI 2007»
13 years 4 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
BMCBI
2008
187views more  BMCBI 2008»
13 years 4 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...
RECOMB
2003
Springer
14 years 5 months ago
Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...