164 search results - page 3 / 33 » GridMD: Program Architecture for Distributed Molecular Simul... |
GECCO
2005
Springer
13 years 11 months ago
2005
Springer
We present a molecular computing algorithm for evolving DNA-encoded genetic programs in a test tube. The use of synthetic DNA molecules combined with biochemical techniques for va...
PPOPP
2006
ACM
13 years 12 months ago
2006
ACM
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
CSB
2005
IEEE
13 years 11 months ago
2005
IEEE
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
IPPS
2006
IEEE
13 years 12 months ago
2006
IEEE
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
SCI
1999
Springer
13 years 10 months ago
1999
Springer
This paper describes the parallelization of a commercial molecular dynamics simulation code, GROMOS96, on a SCI (Scalable Coherent Interface) interconnected PC cluster. The underly...