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» Hardware Accelerated Novel Protein Identification
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FPL
2004
Springer
109views Hardware» more  FPL 2004»
10 years 9 days ago
Hardware Accelerated Novel Protein Identification
The proteins in living organisms perform almost every significant function that governs life. A protein's functionality depends upon its physical structure, which depends on i...
Anish Alex, Jonathan Rose, Ruth Isserlin-Weinberge...
ARC
2007
Springer
102views Hardware» more  ARC 2007»
9 years 11 months ago
Reconfigurable Hardware Acceleration of Canonical Graph Labelling
Many important algorithms in computational biology and related subjects rely on the ability to extract and to identify sub-graphs of larger graphs; an example is to find common fun...
David B. Thomas, Wayne Luk, Michael Stumpf
BMCBI
2008
214views more  BMCBI 2008»
9 years 7 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
SASP
2009
IEEE
170views Hardware» more  SASP 2009»
10 years 1 months ago
Parade: A versatile parallel architecture for accelerating pulse train clustering
— In this paper, we present Parade, a novel and flexible parallel architecture for the deinterleaving of combined pulsetrains. This is a commonly performed task in various areas ...
Amin Ansari, Dan Zhang, Scott A. Mahlke
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
10 years 1 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
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