114 search results - page 1 / 23 » Hardware Acceleration of HMMER on FPGAs |
VLSISP
2010
12 years 11 months ago
2010
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
ASAP
2007
IEEE
13 years 11 months ago
2007
IEEE
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
IPPS
2007
IEEE
13 years 11 months ago
2007
IEEE
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
IPPS
2009
IEEE
13 years 11 months ago
2009
IEEE
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
IEEEPACT
2005
IEEE
13 years 10 months ago
2005
IEEE
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...