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BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami
BMCBI
2008
114views more  BMCBI 2008»
13 years 5 months ago
Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design
Background: Protein structure prediction and computational protein design require efficient yet sufficiently accurate descriptions of aqueous solvent. We continue to evaluate the ...
Marcel Schmidt am Busch, Anne Lopes, Najette Amara...
BMCBI
2006
112views more  BMCBI 2006»
13 years 5 months ago
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins
Background: We describe Distill, a suite of servers for the prediction of protein structural features: secondary structure; relative solvent accessibility; contact density; backbo...
Davide Baù, Alberto J. M. Martin, Catherine...
BIBM
2010
IEEE
277views Bioinformatics» more  BIBM 2010»
13 years 3 months ago
Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors
ATP is a ubiquitous nucleotide that provides energy for cellular activities, catalyzes chemical reactions, and is involved in cellular signaling. The knowledge of the ATPprotein in...
Ke Chen 0003, Marcin J. Mizianty, Lukasz A. Kurgan
NAR
2007
100views more  NAR 2007»
13 years 4 months ago
PIC: Protein Interactions Calculator
Interactions within a protein structure and interactions between proteins in an assembly are essential considerations in understanding molecular basis of stability and functions o...
K. G. Tina, R. Bhadra, N. Srinivasan