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GCB
2000
Springer
137views Biometrics» more  GCB 2000»
13 years 8 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
WABI
2004
Springer
116views Bioinformatics» more  WABI 2004»
13 years 10 months ago
Topological Rearrangements and Local Search Method for Tandem Duplication Trees
—The problem of reconstructing the duplication history of a set of tandemly repeated sequences was first introduced by Fitch [4]. Many recent studies deal with this problem, show...
Denis Bertrand, Olivier Gascuel
EOR
2006
110views more  EOR 2006»
13 years 5 months ago
Scatter search with path relinking for phylogenetic inference
We propose the use of scatter search with path relinking for the inference of phylogenetic trees. Solutions are here represented as trees whose leaves span the set of species unde...
Carlos Cotta
BMCBI
2008
174views more  BMCBI 2008»
13 years 5 months ago
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Background: Inferring gene regulatory networks from data requires the development of algorithms devoted to structure extraction. When only static data are available, gene interact...
Cédric Auliac, Vincent Frouin, Xavier Gidro...
CPM
2010
Springer
120views Combinatorics» more  CPM 2010»
13 years 10 months ago
Mod/Resc Parsimony Inference
Abstract. We address in this paper a new computational biology problem that aims at understanding a mechanism that could potentially be used to genetically manipulate natural insec...
Igor Nor, Danny Hermelin, Sylvain Charlat, Jan Eng...