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» Interval Methods for Kinetic Simulations
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COMPGEOM
1999
ACM
13 years 9 months ago
Interval Methods for Kinetic Simulations
We propose a speed-up method for discrete-event simulations, including sweep-line or -plane techniques, requiring the repeated calculation of the times at which certain discrete e...
Leonidas J. Guibas, Menelaos I. Karavelas
WABI
2005
Springer
124views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Reconstructing Metabolic Networks Using Interval Analysis
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
Warwick Tucker, Vincent Moulton
ICRA
2006
IEEE
86views Robotics» more  ICRA 2006»
13 years 11 months ago
The Statistical Dynamics of Programmed Self-assembly
Abstract— We describe how a graph grammar program for robotic self-assembly, together with measurements of kinetic rate data yield a Markov Process model of the dynamics of progr...
Nils Napp, Samuel Burden, Eric Klavins
WSC
2004
13 years 6 months ago
The Accuracy of a New Confidence Interval Method
Confidence intervals for the median of estimators or other quantiles were proposed as a substitute for usual confidence intervals in terminating and steady-state simulation. This ...
Johann Christoph Strelen
CPHYSICS
2008
106views more  CPHYSICS 2008»
13 years 5 months ago
A space-time-ensemble parallel nudged elastic band algorithm for molecular kinetics simulation
A scalable parallel algorithm has been designed to study long-time dynamics of many-atom systems based on the nudged elastic band method, which performs mutually constrained molec...
Aiichiro Nakano