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ANSS
2007
IEEE
13 years 9 months ago
MDL, A Domain-Specific Language for Molecular Dynamics
Molecular Dynamics (MD) involves solving Newton's equations of motion for a molecular system and propagating the system by time-dependent updates of atomic positions and velo...
Trevor M. Cickovski, Chris Sweet, Jesús A. ...
IRREGULAR
1998
Springer
13 years 9 months ago
Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution
To achieve scalable parallel performance in Molecular Dynamics Simulation, we have modeled and implemented several dynamic spatial domain decomposition algorithms. The modeling is ...
Lars S. Nyland, Jan Prins, Ru Huai Yun, Jan Herman...
FPL
2008
Springer
180views Hardware» more  FPL 2008»
13 years 7 months ago
Compiled hardware acceleration of Molecular Dynamics code
The objective of Molecular Dynamics (MD) simulations is to determine the shape of a molecule in a given biomolecular environment. These simulations are very demanding computationa...
Jason R. Villarreal, Walid A. Najjar
ICRA
2006
IEEE
99views Robotics» more  ICRA 2006»
13 years 11 months ago
Characterization of Protein based Spring-like Elastic Joints for Biorobotic Applications
—This paper presents a molecular mechanics study using a molecular dynamics software (NAMD) for characterization of molecular elastic joints for bio nanorobotic prototyping. Simp...
Mustapha Hamdi, Gaurav Sharma, Antoine Ferreira, C...
HPCC
2005
Springer
13 years 11 months ago
A Multi-scale Computational Approach for Nanoparticle Growth in Combustion Environments
In this paper a new and powerful computer simulation capability for the characterization of carbonaceous nanoparticle assemblies across multiple, connected scales, starting from th...
Angela Violi, Gregory A. Voth