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» Mining Protein Contact Maps
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BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
ISBRA
2007
Springer
13 years 11 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
KDD
2004
ACM
145views Data Mining» more  KDD 2004»
14 years 5 months ago
Discovering Spatial Relationships Between Approximately Equivalent Patterns in Contact Maps
Keith Marsolo, Hui Yang, Srinivasan Parthasarathy,...
WABI
2004
Springer
13 years 10 months ago
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns
Abstract. Contact maps are a model to capture the core information in the structure of biological molecules, e.g., proteins. A contact map consists of an ordered set ¡ of elements...
Jens Gramm
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
13 years 3 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...