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» On Using Fuzzy Contact Maps for Protein Structure Comparison
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ICANNGA
2007
Springer
128views Algorithms» more  ICANNGA 2007»
13 years 11 months ago
A Demonstration of Clustering in Protein Contact Maps for Alpha Helix Pairs
Abstract. The purpose of this work is to demonstrate that it is possible to cluster contact maps for pairs of alpha helices such that each of the clusters corresponds to a group of...
Robert Fraser, Janice I. Glasgow
ISBRA
2007
Springer
13 years 11 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
13 years 3 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...
BIBE
2003
IEEE
124views Bioinformatics» more  BIBE 2003»
13 years 11 months ago
Prediction of Contact Maps Using Support Vector Machines
Contact map prediction is of great interest for its application in fold recognition and protein 3D structure determination. In this paper we present a contact-map prediction algor...
Ying Zhao, George Karypis
BMCBI
2007
147views more  BMCBI 2007»
13 years 5 months ago
Improved residue contact prediction using support vector machines and a large feature set
Background: Predicting protein residue-residue contacts is an important 2D prediction task. It is useful for ab initio structure prediction and understanding protein folding. In s...
Jianlin Cheng, Pierre Baldi