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» On the optimality of the neighbor-joining algorithm
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CORR
2006
Springer
91views Education» more  CORR 2006»
13 years 5 months ago
Why neighbor-joining works
We show that the neighbor-joining algorithm is a robust quartet method for constructing trees from distances. This leads to a new performance guarantee that contains Atteson's...
Radu Mihaescu, Dan Levy, Lior Pachter
ESA
1999
Springer
82views Algorithms» more  ESA 1999»
13 years 9 months ago
Quartet Cleaning: Improved Algorithms and Simulations
A critical step in all quartet methods for constructing evolutionary trees is the inference of the topology for each set of four sequences (i.e. quartet). It is a well–known fact...
Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li...
BIBE
2003
IEEE
13 years 10 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
JCB
2008
71views more  JCB 2008»
13 years 5 months ago
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm
Quartet-based phylogeny reconstruction methods, such as Quartet Puzzling, were introduced in the hope that they might be competitive with maximum likelihood methods, without being...
Sagi Snir, Tandy Warnow, Satish Rao
RECOMB
2006
Springer
14 years 5 months ago
Maximal Accurate Forests from Distance Matrices
Abstract. We present a fast converging method for distance-based phylogenetic inference, which is novel in two respects. First, it is the only method (to our knowledge) to guarante...
Constantinos Daskalakis, Cameron Hill, Alexander J...