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» Parameters for accurate genome alignment
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NAR
2006
107views more  NAR 2006»
13 years 4 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
APBC
2004
13 years 6 months ago
EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment
Following advances in biotechnology, many new whole genome sequences are becoming available every year. A lot of useful information can be derived from the alignment and compariso...
Jitender S. Deogun, Jingyi Yang, Fangrui Ma
WABI
2004
Springer
13 years 10 months ago
Chaining Algorithms for Alignment of Draft Sequence
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...
RECOMB
2003
Springer
14 years 5 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm

Publication
234views
13 years 8 months ago
Evolution of Analog Networks using Local String Alignment on Highly Reorganizable Genomes
We introduce and apply a genetic representation for analog electronic circuits based on the association of character strings extracted from the genome with the terminals and param...
Claudio Mattiussi, Dario Floreano