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BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
14 years 8 days ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
RECOMB
2004
Springer
14 years 6 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
EVOW
2009
Springer
13 years 3 months ago
Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective
One of the purposes of Systems Biology is the quantitative modeling of biochemical networks. In this effort, the use of dynamical mathematical models provides for powerful tools in...
Pedro Evangelista, Isabel Rocha, Eugénio C....
BIOCOMP
2006
13 years 7 months ago
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
IJON
2006
90views more  IJON 2006»
13 years 5 months ago
Adaptive sensory processing for efficient place coding
This work presents a neural model of self-localisation implemented on a simulated mobile robot with a realistic visual input. A population of modelled place cells with overlapping...
Denis Sheynikhovich, Ricardo Chavarriaga, Thomas S...