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» Reconstruction of 3D Structures from Protein Contact Maps
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ISBRA
2007
Springer
13 years 11 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
BMCBI
2010
120views more  BMCBI 2010»
13 years 4 months ago
Optimal contact definition for reconstruction of Contact Maps
Background: Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being pref...
Jose M. Duarte, Rajagopal Sathyapriya, Henning Ste...
WABI
2007
Springer
107views Bioinformatics» more  WABI 2007»
13 years 10 months ago
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps
Marco Vassura, Luciano Margara, Pietro di Lena, Fi...
BMCBI
2006
152views more  BMCBI 2006»
13 years 4 months ago
A two-stage approach for improved prediction of residue contact maps
Background: Protein topology representations such as residue contact maps are an important intermediate step towards ab initio prediction of protein structure. Although improvemen...
Alessandro Vullo, Ian Walsh, Gianluca Pollastri
KDD
2002
ACM
154views Data Mining» more  KDD 2002»
14 years 5 months ago
Mining Protein Contact Maps
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...