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CMSB
2010
Springer
9 years 8 months ago
Stochasticity in reactions: a probabilistic Boolean modeling approach
Boolean modeling frameworks have long since proved their worth for capturing and analyzing essential characteristics of complex systems. Hybrid approaches aim at exploiting the ad...
Sven Twardziok, Heike Siebert, Alexander Heyl
BIOCOMP
2007
10 years 2 months ago
Interaction Models for Biochemical Reactions
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...
CANDC
2004
ACM
10 years 1 months ago
Stochastic approaches for modelling in vivo reactions
In recent years, stochastic modelling has emerged as a physically more realistic alternative for modelling in vivo reactions. There are numerous stochastic approaches available in...
Thomas E. Turner, Santiago Schnell, Kevin Burrage
AB
2007
Springer
10 years 7 months ago
Analyzing Pathways Using SAT-Based Approaches
Abstract. A network of reactions is a commonly used paradigm for representing knowledge about a biological process. How does one understand such generic networks and answer queries...
Ashish Tiwari, Carolyn L. Talcott, Merrill Knapp, ...
CDC
2010
IEEE
141views Control Systems» more  CDC 2010»
9 years 8 months ago
Hybrid moment computation algorithm for biochemical reaction networks
Moment computation is essential to the analysis of stochastic kinetic models of biochemical reaction networks. It is often the case that the moment evolution, usually the first and...
Yun-Bo Zhao, Jongrae Kim, João Pedro Hespan...
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