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» Swift Algorithms for Repeated Consensus
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SRDS
2010
IEEE
13 years 3 months ago
Swift Algorithms for Repeated Consensus
We introduce the notion of a swift algorithm. Informally, an algorithm that solves the repeated consensus is swift if, in a partial synchronous run of this algorithm, eventually no...
Fatemeh Borran, Martin Hutle, Nuno Santos, Andr&ea...
GECCO
2007
Springer
167views Optimization» more  GECCO 2007»
13 years 11 months ago
An improved restricted growth function genetic algorithm for the consensus clustering of retinal nerve fibre data
This paper describes an extension to the Restricted Growth Function grouping Genetic Algorithm applied to the Consensus Clustering of a retinal nerve fibre layer data-set. Consens...
Stephen Swift, Allan Tucker, Jason Crampton, David...
JBI
2004
171views Bioinformatics» more  JBI 2004»
13 years 6 months ago
Consensus Clustering and Functional Interpretation of Gene Expression Data
Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus s...
Paul Kellam, Stephen Swift, Allan Tucker, Veronica...
RECOMB
2001
Springer
14 years 5 months ago
A new approach to fragment assembly in DNA sequencing
For the last twenty years fragment assembly in DNA sequencing followed the "overlap - layout - consensus" paradigm that is used in all currently available assembly tools...
Pavel A. Pevzner, Haixu Tang, Michael S. Waterman
EVOW
2010
Springer
13 years 3 months ago
Finding Gapped Motifs by a Novel Evolutionary Algorithm
Background: Identifying approximately repeated patterns, or motifs, in DNA sequences from a set of co-regulated genes is an important step towards deciphering the complex gene reg...
Chengwei Lei, Jianhua Ruan