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» The Gene Ontology project in 2008
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BIBM
2008
IEEE
107views Bioinformatics» more  BIBM 2008»
14 years 3 days ago
A Functional Network of Yeast Genes Using Gene Ontology Information
In the post-genomic era, the organization of genes into networks has played an important role in characterizing the functions of individual genes and the interplay between them. I...
Erliang Zeng, Giri Narasimhan, Lisa Schneper, Kala...
DILS
2008
Springer
13 years 7 months ago
Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues
In this presentation, we review some examples of successful biomedical data integration projects in which ontologies play an important role, including the integration of genomic da...
Olivier Bodenreider
CBMS
2008
IEEE
13 years 7 months ago
Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis
The Gene Ontology Consortium built the Gene Ontology database (GO) to address the need for a common standard in naming genes and gene products. Using different names for the same ...
Getiria Onsongo, Hongwei Xie, Timothy J. Griffin, ...
BMCBI
2008
200views more  BMCBI 2008»
13 years 5 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
NAR
2008
74views more  NAR 2008»
13 years 5 months ago
Gene Ontology annotations at SGD: new data sources and annotation methods
The Saccharomyces Genome Database (SGD; http:// www.yeastgenome.org/) collects and organizes biological information about the chromosomal features and gene products of the budding...
Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen...