89 search results - page 3 / 18 » The meaning of alignment: lessons from structural diversity |
ISMB
1997
13 years 6 months ago
1997
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
BMCBI
2005
13 years 5 months ago
2005
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
NAR
2006
13 years 5 months ago
2006
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
RECOMB
2003
Springer
14 years 5 months ago
2003
Springer
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
BMCBI
2006
13 years 5 months ago
2006
Background: The development and testing of functions for the modeling of protein energetics is an important part of current research aimed at understanding protein structure and f...