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» Tractable Inference for Complex Stochastic Processes
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NIPS
2004
13 years 6 months ago
Multiple Alignment of Continuous Time Series
Multiple realizations of continuous-valued time series from a stochastic process often contain systematic variations in rate and amplitude. To leverage the information contained i...
Jennifer Listgarten, Radford M. Neal, Sam T. Rowei...
RECOMB
2006
Springer
14 years 5 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
JCB
2007
145views more  JCB 2007»
13 years 5 months ago
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). This process has great significance for unde...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
JCB
2008
159views more  JCB 2008»
13 years 5 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
ICALP
2001
Springer
13 years 9 months ago
Approximating the Minimum Spanning Tree Weight in Sublinear Time
We present a probabilistic algorithm that, given a connected graph G (represented by adjacency lists) of average degree d, with edge weights in the set {1, . . . , w}, and given a ...
Bernard Chazelle, Ronitt Rubinfeld, Luca Trevisan