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RECOMB
2006
Springer
14 years 5 months ago
RNA Secondary Structure Prediction Via Energy Density Minimization
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
Can Alkan, Emre Karakoç, Süleyman Cenk...
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
13 years 11 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
WABI
2007
Springer
13 years 11 months ago
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...
WABI
2007
Springer
133views Bioinformatics» more  WABI 2007»
13 years 11 months ago
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
Chunmei Liu, Yinglei Song, Louis W. Shapiro
BMCBI
2008
142views more  BMCBI 2008»
13 years 5 months ago
RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database
Background: The ability to access, search and analyse secondary structures of a large set of known RNA molecules is very important for deriving improved RNA energy models, for eva...
Mirela Andronescu, Vera Bereg, Holger H. Hoos, Ann...