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    BIOCOMP
    2008
    101views Bioinformatics» more  BIOCOMP 2008»
    Combinations of Context-Free Shifts and Shifts of Finite Type
    13 years 6 months ago
    Combinations of Context-Free Shifts and Shifts of Finite Type
    Download  ita.ucsd.edu
    A Dyck shift and a Motzkin shift are mathematical models for constraints on genetic sequences. In terms of the theory of symbolic dynamics, neither of the Dyck shift nor the Motzki...
    Hiroshi Kamabe
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    BIOCOMP
    2008
    128views Bioinformatics» more  BIOCOMP 2008»
    Identifying Protein Flexibility by NMA
    13 years 6 months ago
    Identifying Protein Flexibility by NMA
    Download  complex.zesoi.fer.hr
    - Here proposed apriori method for identification of protein flexibility relies on one end-state conformation of the protein. This method has comparative advantage over many others...
    Kresimir Sikic, Branko Jeren, Sanja Tomic
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    BIOCOMP
    2008
    84views Bioinformatics» more  BIOCOMP 2008»
    An Efficient Algorithm for the Longest Pattern Subsequence Problem
    13 years 6 months ago
    An Efficient Algorithm for the Longest Pattern Subsequence Problem
    Download  www.cc.gatech.edu
    Xiaodong Wang, Lei Wang, Yingjie Wu
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    BIOCOMP
    2008
    76views Bioinformatics» more  BIOCOMP 2008»
    Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening
    13 years 6 months ago
    Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening
    Download  faculty.cs.tamu.edu
    ct The enrichment and recall of known inhibitors in a virtual screen are correlated with the probability of finding effective inhibitors through this process. In practice, a large ...
    Reetal Pai, James C. Sacchettini, Thomas R. Ioerge...
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    BIOCOMP
    2007
    161views Bioinformatics» more  BIOCOMP 2007»
    Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning
    13 years 6 months ago
    Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning
    Download  www.biomedcentral.com
    The growing body of DNA microarray data has the potential to advance our understanding of the molecular basis of disease. However annotating microarray datasets with clinically us...
    Cole Harris, Noushin Ghaffari
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    BIOCOMP
    2008
    132views Bioinformatics» more  BIOCOMP 2008»
    GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
    13 years 6 months ago
    GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
    Download  www.cse.iitb.ac.in
    Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
    Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar
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    BIOCOMP
    2007
    90views Bioinformatics» more  BIOCOMP 2007»
    Prediction of trans-antisense Transcripts in Arabidopsis thaliana
    13 years 6 months ago
    Prediction of trans-antisense Transcripts in Arabidopsis thaliana
    Download  www.biomedcentral.com
    Background: Natural antisense transcripts (NATs) are coding or non-coding RNAs with sequence complementarity to other transcripts (sense transcripts). These RNAs could potentially...
    Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
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    BIOCOMP
    2007
    102views Bioinformatics» more  BIOCOMP 2007»
    Towards Phylogenomic Reconstruction
    13 years 6 months ago
    Towards Phylogenomic Reconstruction
    Download  research.amnh.org
    Reconstructing phylogenies is one of the primary objectives in evolution studies. Efficient software to reconstruct phylogenies based on isolated genes has existed for decades, ye...
    Le Vinh, Andres Varon, Daniel Janies, Ward Wheeler
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    BIOCOMP
    2007
    111views Bioinformatics» more  BIOCOMP 2007»
    Learning Node Replacement Graph Grammars in Metabolic Pathways
    13 years 6 months ago
    Learning Node Replacement Graph Grammars in Metabolic Pathways
    Download  www.eecs.wsu.edu
    — This paper describes graph-based relational, unsupervised learning algorithm to infer node replacement graph grammar and its application to metabolic pathways. We search for fr...
    Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder...
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    BIOCOMP
    2008
    76views Bioinformatics» more  BIOCOMP 2008»
    On the Role of a Nonlinear Stress-Strain Relation in Brain Trauma
    13 years 6 months ago
    On the Role of a Nonlinear Stress-Strain Relation in Brain Trauma
    Download  users.ices.utexas.edu
    We investigate how a nonlinear stress-strain relation (that leads to a stiffening of the brain matter under strain) influences the brain dynamics in traumatic situations. We numeri...
    Igor Szczyrba, Martin Burtscher, Rafal Szczyrba
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