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CSB
2005
IEEE
149views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Combinatorial method of splice sites prediction
Predicting and proper ranking of splice sites (SS) is a challenging problem in bioinformatics and machine learning communities. Proposed method of donor and acceptor SSs predictio...
Alexander G. Churbanov, Hesham H. Ali
CSB
2005
IEEE
145views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Data Mining in situ Gene Expression Patterns at Cellular Resolution
James Carson, Christina Thaller, Musodiq Bello, Wa...
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
13 years 11 months ago
PLATCOM: a Platform for Computational Comparative Genomics on the Web
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
CSB
2005
IEEE
163views Bioinformatics» more  CSB 2005»
13 years 11 months ago
A symbolic approach to the simulation of biochemical models: application to circadian rhythms
Symbolic rewriting systems are gaining interest as tools for simulating biochemical dynamics. Compared to traditional methods based on differential equations, the symbolic approac...
Federico Fontana, Luca Bianco, Vincenzo Manca
CSB
2005
IEEE
103views Bioinformatics» more  CSB 2005»
13 years 11 months ago
ECOME: A simple model for an evolving consumption web
ECOME is an interactive, graph-based model for simulating an evolving, closed consumption web. It demonstrates the fundamental behavior of a global ecosystem over evolutionary tim...
Christopher Bystroff, Sam DeLuca, Carl N. McDaniel
CSB
2005
IEEE
109views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Patterns of Gene Deletion following Genome Duplication in Yeast
Whole genome duplication (WGD) is followed by massive duplicate deletion that reorganizes gene adjacencies. We compare the deletion patterns and adjacency reorganization following...
Jake K. Byrnes, Wen-Hsiung Li
CSB
2005
IEEE
120views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Chemical Structure-Activity Relationship Visualization Using Structure Activity Maps
This study shows an effective way to explore and visualize the structure-activity relationships (SARs) of flavonoids with antioxidant activity using structure- activity maps (SAMs...
Weiguo Fan, Xin Lin, Yu-Wei Hsieh, Johnnie W. Bake...
CSB
2005
IEEE
116views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Oscillatory dynamics in the mitogen-activated protein kinase cascade
We have used quantitative modeling of signaling networks to show that the mitogen-activated protein kinase cascade — a highly-conserved signaling network in eukaryotes — can f...
K.-H. Chiam, Vipul Bhargava, Gunaretnam Rajagopal
CSB
2005
IEEE
110views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Maximum Sequence Alignment Fails to Predict Off-targeted Gene Regulation by RNAi
We have employed various sequence alignment algorithms and scoring techniques to determine whether current computational tools accurately predict genes that will be off-targeted b...
Amanda Birmingham, Emily M. Anderson, William S. M...