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    BCB
    2010
    175views Bioinformatics» more  BCB 2010»
    Gene set analysis using principal components
    12 years 11 months ago
    Gene set analysis using principal components
    Download  www.cs.unc.edu
    We present a new method for identifying gene sets associated with labeled samples, where the labels can be case versus control, or genotype differences. Existing approaches to thi...
    Isa Kemal Pakatci, Wei Wang, Leonard McMillan
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    BCB
    2010
    213views Bioinformatics» more  BCB 2010»
    Markov clustering of protein interaction networks with improved balance and scalability
    12 years 11 months ago
    Markov clustering of protein interaction networks with improved balance and scalability
    Download  www.cse.ohio-state.edu
    Markov Clustering (MCL) is a popular algorithm for clustering networks in bioinformatics such as protein-protein interaction networks and protein similarity networks. An important...
    Venu Satuluri, Srinivasan Parthasarathy, Duygu Uca...
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    BCB
    2010
    166views Bioinformatics» more  BCB 2010»
    Fast graph approaches to measure influenza transmission across geographically distributed host types
    12 years 11 months ago
    Fast graph approaches to measure influenza transmission across geographically distributed host types
    Download  www.cse.unr.edu
    Recent advances in next generation sequencing are providing a number of large whole-genome sequence datasets stemming from globally distributed disease occurrences. This offers an...
    Adrienne Breland, Karen Schlauch, Mehmet Hadi Gune...
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    BCB
    2010
    138views Bioinformatics» more  BCB 2010»
    Comparative analysis of biclustering algorithms
    12 years 11 months ago
    Comparative analysis of biclustering algorithms
    Download  bmi.osu.edu
    Biclustering is a very popular method to identify hidden co-regulation patterns among genes. There are numerous biclustering algorithms designed to undertake this challenging task...
    Doruk Bozdag, Ashwin S. Kumar, Ümit V. &Ccedi...
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    BCB
    2010
    150views Bioinformatics» more  BCB 2010»
    REAL: an efficient REad ALigner for next generation sequencing reads
    12 years 11 months ago
    REAL: an efficient REad ALigner for next generation sequencing reads
    Download  www.dcs.kcl.ac.uk
    Kimon Frousios, Costas S. Iliopoulos, Laurent Mouc...
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    BCB
    2010
    489views Bioinformatics» more  BCB 2010»
    ReFHap: a reliable and fast algorithm for single individual haplotyping
    12 years 11 months ago
    ReFHap: a reliable and fast algorithm for single individual haplotyping
    Download  www.engr.uconn.edu
    Jorge Duitama, Thomas Huebsch, Gayle McEwen, Eun-K...
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    BCB
    2010
    161views Bioinformatics» more  BCB 2010»
    Genome-wide compatible SNP intervals and their properties
    12 years 11 months ago
    Genome-wide compatible SNP intervals and their properties
    Download  www.kylejmoore.com
    Recent studies suggest that the mammalian genomes can be subdivided in segments within which there is limited haplotype diversity. Understanding the distribution and structure of ...
    Jeremy W. Wang, Kyle J. Moore, Qi Zhang, Fernando ...
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    BCB
    2010
    127views Bioinformatics» more  BCB 2010»
    A novel network model for molecular prognosis
    12 years 11 months ago
    A novel network model for molecular prognosis
    Download  www.hsc.wvu.edu
    Network-based genome-wide association studies (NWAS) utilize the molecular interactions between genes and functional pathways in biomarker identification. This study presents a no...
    Ying-Wooi Wan, Swetha Bose, James Denvir, Nancy La...
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    BCB
    2010
    150views Bioinformatics» more  BCB 2010»
    Enzymatic target identification with dynamic states
    12 years 11 months ago
    Enzymatic target identification with dynamic states
    Download  www.cise.ufl.edu
    As a metabolic network reaches from a state to a steady state, a subset of its fluxes gradually change. The sequence of intermediate states, called the dynamic state, shows the pa...
    Bin Song, Sanjay Ranka, Tamer Kahveci
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    BCB
    2010
    99views Bioinformatics» more  BCB 2010»
    Semi-supervised sequence classification using abstraction augmented Markov models
    12 years 11 months ago
    Semi-supervised sequence classification using abstraction augmented Markov models
    Download  www.cs.iastate.edu
    Cornelia Caragea, Adrian Silvescu, Doina Caragea, ...
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