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    BMCBI
    2007
    117views more  BMCBI 2007»
    Supervised multivariate analysis of sequence groups to identify specificity determining residues
    13 years 5 months ago
    Supervised multivariate analysis of sequence groups to identify specificity determining residues
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    Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
    Iain M. Wallace, Desmond G. Higgins
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    BMCBI
    2007
    82views more  BMCBI 2007»
    Glycosylation site prediction using ensembles of Support Vector Machine classifiers
    13 years 5 months ago
    Glycosylation site prediction using ensembles of Support Vector Machine classifiers
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    Cornelia Caragea, Jivko Sinapov, Adrian Silvescu, ...
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    BMCBI
    2007
    82views more  BMCBI 2007»
    Visualization of three-way comparisons of omics data
    13 years 5 months ago
    Visualization of three-way comparisons of omics data
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    Background: Density plot visualizations (also referred to as heat maps or color maps) are widely used in different fields including large-scale omics studies in biological science...
    Richard Baran, Martin Robert, Makoto Suematsu, Tom...
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    BMCBI
    2007
    227views more  BMCBI 2007»
    Growing functional modules from a seed protein via integration of protein interaction and gene expression data
    13 years 5 months ago
    Growing functional modules from a seed protein via integration of protein interaction and gene expression data
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    Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
    Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
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    BMCBI
    2007
    124views more  BMCBI 2007»
    BioInfer: a corpus for information extraction in the biomedical domain
    13 years 5 months ago
    BioInfer: a corpus for information extraction in the biomedical domain
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    Background: Lately, there has been a great interest in the application of information extraction methods to the biomedical domain, in particular, to the extraction of relationship...
    Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari B...
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    BMCBI
    2007
    139views more  BMCBI 2007»
    Improving model predictions for RNA interference activities that use support vector machine regression by combining and filterin
    13 years 5 months ago
    Improving model predictions for RNA interference activities that use support vector machine regression by combining and filterin
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    Background: RNA interference (RNAi) is a naturally occurring phenomenon that results in the suppression of a target RNA sequence utilizing a variety of possible methods and pathwa...
    Andrew S. Peek
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    BMCBI
    2007
    112views more  BMCBI 2007»
    Integrated olfactory receptor and microarray gene expression databases
    13 years 5 months ago
    Integrated olfactory receptor and microarray gene expression databases
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    Background: Gene expression patterns of olfactory receptors (ORs) are an important component of the signal encoding mechanism in the olfactory system since they determine the inte...
    Nian Liu, Chiquito J. Crasto, Minghong Ma
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    BMCBI
    2007
    128views more  BMCBI 2007»
    A Bayesian nonparametric method for prediction in EST analysis
    13 years 5 months ago
    A Bayesian nonparametric method for prediction in EST analysis
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    Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
    Antonio Lijoi, Ramsés H. Mena, Igor Prü...
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    BMCBI
    2007
    104views more  BMCBI 2007»
    TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets
    13 years 5 months ago
    TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets
    Download  www.biomedcentral.com
    Background: The nucleotide sequence flanking the translation initiation codon (start codon context) affects the translational efficiency of eukaryotic mRNAs, and may indicate the ...
    Renato Vicentini, Marcelo Menossi
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    BMCBI
    2007
    147views more  BMCBI 2007»
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    13 years 5 months ago
    Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
    Download  www.biomedcentral.com
    Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain specific combinations of binding sites for various transcription factors. Althoug...
    Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, ...
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