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CSB
2005
IEEE
160views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Predicting Continuous Epitopes in Proteins
The ability to predict antigenic sites on proteins is crucial for the production of synthetic peptide vaccines and synthetic peptide probes of antibody structure. Large number of ...
Reeti Tandon, Sudeshna Adak, Brion Sarachan, Willi...
CSB
2005
IEEE
121views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Clustering Genes Using Gene Expression and Text Literature Data
Chengyong Yang, Erliang Zeng, Tao Li, Giri Narasim...
CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
14 years 3 months ago
A Parallel Algorithm for Clustering Protein-Protein Interaction Networks
The increasing availability of interaction graphs requires new resource-efficient tools capable of extracting valuable biological knowledge from these networks. In this paper we ...
Qiaofeng Yang, Stefano Lonardi
CSB
2005
IEEE
168views Bioinformatics» more  CSB 2005»
14 years 3 months ago
cis-Regulatory Element Prediction in Mammalian Genomes
The identification of cis-regulatory elements and modules is an important step in understanding the regulation of genes. We have developed a pipeline capable of running multiple m...
Asim S. Siddiqui, Gordon Robertson, Misha Bilenky,...
CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases
With the rapid growth of biomedical research databases, opportunities for scientific inquiry have expanded quickly and led to a demand for computational methods that can extract b...
Mohammed I. Rafiq, Martin J. O'Connor, Amar K. Das
CSB
2005
IEEE
161views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Data Integration in the Mouse Genome Informatics (MGI) Database
The Mouse Genome Informatics (MGI) Database at The Jackson Laboratory provides a comprehensive public resource about the laboratory mouse. MGI curated data types include gene repr...
Donnie Qi, Judith A. Blake, James A. Kadin, Joel E...
CSB
2005
IEEE
210views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Problem Solving Environment Approach to Integrating Diverse Biological Data Sources
Scientists face an ever-increasing challenge in investigating biological systems with high throughput experimental methods such as mass spectrometry and gene arrays because of the...
Eric G. Stephan, Kyle R. Klicker, Mudita Singhal, ...
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Biological Pathway Prediction from Multiple Data Sources Using Iterative Bayesian Updating
There is a diversity of functional genomics data, such as gene expression data from microarray experiments, phenotypic data from gene deletion experiments, protein-protein interac...
Corey Powell, Joshua M. Stuart
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Investigation into Biomedical Literature Classification Using Support Vector Machines
Specific topic search in the PubMed Database, one of the most important information resources for scientific community, presents a big challenge to the users. The researcher typic...
Nalini Polavarapu, Shamkant B. Navathe, Ramprasad ...