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NAR
2011
182views Computer Vision» more  NAR 2011»
9 years 2 months ago
PAIR: the predicted Arabidopsis interactome resource
The predicted Arabidopsis interactome resource (PAIR, http://www.cls.zju.edu.cn/pair/), comprised of 5990 experimentally reported molecular interactions in Arabidopsis thaliana to...
Mingzhi Lin, Xueling Shen, Xin Chen
JAIR
2008
157views more  JAIR 2008»
9 years 11 months ago
Learning to Reach Agreement in a Continuous Ultimatum Game
It is well-known that acting in an individually rational manner, according to the principles of classical game theory, may lead to sub-optimal solutions in a class of problems nam...
Steven de Jong, Simon Uyttendaele, Karl Tuyls
BMCBI
2006
129views more  BMCBI 2006»
9 years 11 months ago
Functional clustering of yeast proteins from the protein-protein interaction network
Background: The abundant data available for protein interaction networks have not yet been fully understood. New types of analyses are needed to reveal organizational principles o...
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jerni...
BMCBI
2006
108views more  BMCBI 2006»
9 years 11 months ago
SPIDer: Saccharomyces protein-protein interaction database
Background: Since proteins perform their functions by interacting with one another and with other biomolecules, reconstructing a map of the protein-protein interactions of a cell,...
Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zho...
BMCBI
2007
181views more  BMCBI 2007»
9 years 11 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
BIOCOMP
2006
10 years 1 months ago
Learning Genetic and Gene Bayesian Networks with Hidden Variables: Bilayer Verification Algorithm
To improve the recovery of gene-gene and marker-gene (eQTL) interaction networks from microarray and genetic data, we propose a new procedure for learning Bayesian networks. This a...
Jason E. Aten
RECOMB
2010
Springer
10 years 1 months ago
Algorithms for Detecting Significantly Mutated Pathways in Cancer
Abstract. Recent genome sequencing studies have shown that the somatic mutations that drive cancer development are distributed across a large number of genes. This mutational heter...
Fabio Vandin, Eli Upfal, Benjamin J. Raphael
COMPLIFE
2005
Springer
10 years 5 months ago
The Architecture of a Proteomic Network in the Yeast
Abstract. We describe an approach to clustering the yeast protein-protein interaction network in order to identify functional modules, groups of proteins forming multi-protein comp...
Emad Ramadan, Christopher Osgood, Alex Pothen
ATAL
2005
Springer
10 years 5 months ago
Formation of cooperation structure by interaction network in directed multi-agent
A directed agent implies an agent with high constraints in both recognition and motion. Because of the embodied restrictions, the directed agent perceives a sense of subjective di...
Kosuke Sekiyama, Yukihisa Okade
CEC
2009
IEEE
10 years 6 months ago
Evolution of cooperation on different pairs of interaction and replacement networks with various intensity of selection
— There are various discussions on the evolution of cooperation on different pairs of interaction network for playing games and the replacement network for imitation of strategie...
Reiji Suzuki, Takaya Arita
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