PSB
2004
13 years 6 months ago
2004
An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
APBC
2003
13 years 6 months ago
2003
Databases contain a large amount of data about metabolic pathways, in particular about similar pathways in different species. Biologists are familiar with visual representations ...
CIBCB
2005
IEEE
13 years 6 months ago
2005
IEEE
—Metabolic pathways are crucial to our understanding of biology. The speed at which new organisms are being sequenced is outstripping our ability to experimentally determine thei...
BIBM
2007
IEEE
13 years 8 months ago
2007
IEEE
Different databases of metabolic pathways assign pathways different keys. For this reason, it is difficult to automatically compare pathways across databases. We introduce an algo...
IPPS
2002
IEEE
13 years 9 months ago
2002
IEEE
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
RECOMB
2010
Springer
13 years 9 months ago
2010
Springer
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
GG
2004
Springer
13 years 10 months ago
2004
Springer
Biochemical pathways, such as metabolic, regulatory, and signal transduction pathways, constitute complex networks of functional and physical interactions between molecular species...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
In this paper we present a methodology to estimate rates of enzymatic reactions in metabolic pathways. Our methodology is based on applying stochastic logic learning in ensemble le...
GECCO
2005
Springer
13 years 10 months ago
2005
Springer
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
ICDM
2006
IEEE
13 years 10 months ago
2006
IEEE
We present a method for finding biologically meaningful patterns on metabolic pathways using the SUBDUE graph-based relational learning system. A huge amount of biological data t...