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NAR
2008
101views more  NAR 2008»
9 years 24 days ago
RNALogo: a new approach to display structural RNA alignment
Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang
NAR
2008
174views more  NAR 2008»
9 years 25 days ago
miRGator: an integrated system for functional annotation of microRNAs
MicroRNAs (miRNAs) constitute an important class of regulators that are involved in various cellular and disease processes. However, the functional significance of each miRNA is m...
Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk ...
NAR
2008
122views more  NAR 2008»
9 years 1 months ago
PlantTFDB: a comprehensive plant transcription factor database
Transcription factors (TFs) play key roles in controlling gene expression. Systematic identification and annotation of TFs, followed by construction of TF databases may serve as u...
Anyuan Guo, Xin Chen, Ge Gao, He Zhang, Qihui Zhu,...
NAR
2008
101views more  NAR 2008»
9 years 2 months ago
PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
We have developed PVS (Protein Variability Server), a web-based tool that uses several variability metrics to compute the absolute site variability in multiple protein-sequence al...
Maria Garcia-Boronat, Carmen M. Diez-Rivero, Ellis...
NAR
2008
116views more  NAR 2008»
9 years 2 months ago
SuperPred: drug classification and target prediction
The drug classification scheme of the World Health Organization (WHO) [Anatomical Therapeutic Chemical (ATC)-code] connects chemical classification and therapeutic approach. It is...
Mathias Dunkel, Stefan Günther, Jessica Ahmed...
NAR
2008
73views more  NAR 2008»
9 years 2 months ago
LocalMove: computing on-lattice fits for biopolymers
Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The we...
Yann Ponty, R. Istrate, E. Porcelli, Peter Clote
NAR
2008
125views more  NAR 2008»
9 years 2 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
NAR
2008
107views more  NAR 2008»
9 years 2 months ago
ISPIDER Central: an integrated database web-server for proteomics
Despite the growing volumes of proteomic data, integration of the underlying results remains problematic owing to differences in formats, data captured, protein accessions and ser...
Jennifer A. Siepen, Khalid Belhajjame, Julian N. S...
NAR
2008
138views more  NAR 2008»
9 years 2 months ago
TarO: a target optimisation system for structural biology
TarO (http://www.compbio.dundee.ac.uk/taro) offers a single point of reference for key bioinformatics analyses relevant to selecting proteins or domains for study by structural bi...
Ian M. Overton, C. A. Johannes van Niekerk, Lester...
NAR
2008
87views more  NAR 2008»
9 years 2 months ago
The CGView Server: a comparative genomics tool for circular genomes
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can b...
Jason R. Grant, Paul Stothard
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