RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
MicroRNAs (miRNAs) have recently been discovered as an important class of non-coding RNA genes that play a major role in regulating gene expression, providing a means to control th...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
We present a model for predicting HLA class I restricted CTL epitopes. In contrast to almost all other work in this area, we train a single model on epitopes from all HLA alleles a...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. We present a fast converging method for distance-based phylogenetic inference, which is novel in two respects. First, it is the only method (to our knowledge) to guarante...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gen...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...