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112
Voted
CSB
2004
IEEE
137views Bioinformatics» more  CSB 2004»
15 years 7 months ago
A Self-Tuning Method for One-Chip SNP Identification
Current methods for interpreting oligonucleotidebased SNP-detection microarrays, SNP chips, are based on statistics and require extensive parameter tuning as well as extremely hig...
Michael Molla, Jude W. Shavlik, Thomas Albert, Tod...
122
Voted
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli
RNA genes lack most of the signals used for protein gene identification. A major shortcoming of previous discriminative methods to distinguish functional RNA (fRNA) genes from oth...
Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, S...
239
Voted
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
119
Voted
BALT
2006
15 years 7 months ago
On Ontology, ontologies, Conceptualizations, Modeling Languages, and (Meta)Models
In philosophy, the term ontology has been used since the 17th century to refer both to a philosophical discipline (Ontology with a capital "O"), and as a domain-independe...
Giancarlo Guizzardi
101
Voted
CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...