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2006
IEEE

Extending Pattern Branching to Handle Challenging Instances

14 years 5 months ago
Extending Pattern Branching to Handle Challenging Instances
We consider the planted motif search problem, a problem that arises from the need to find transcription factor-binding sites in genomic information. One of the fastest non-exact algorithms that solves this problem is Pattern Branching [10], however this algorithm fails to solve challenging instances such as (15, 5) in most cases. In this paper we discuss a simple extension to this algorithm and an implementation of it that allows us to tackle challenging instances such as (15, 5) and (17, 6) with accuracy close to 100%.
Jaime Davila, Sanguthevar Rajasekaran
Added 10 Jun 2010
Updated 10 Jun 2010
Type Conference
Year 2006
Where BIBE
Authors Jaime Davila, Sanguthevar Rajasekaran
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