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» A 3D pattern matching algorithm for DNA sequences
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BMCBI
2006
153views more  BMCBI 2006»
15 years 1 months ago
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
Background: The identification of patterns in biological sequences is a key challenge in genome analysis and in proteomics. Frequently such patterns are complex and highly variabl...
Markus Seiler, Alexander Mehrle, Annemarie Poustka...
162
Voted
BMCBI
2002
109views more  BMCBI 2002»
15 years 1 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
104
Voted
IBPRIA
2003
Springer
15 years 7 months ago
Local Motion Estimation from Stereo Image Sequences
This paper proposes a method for representing local temporal deformations of a 3D flexible surface in an orthogonal space from a sequence of stereo images. The approach uses a disp...
Nicolas Pérez de la Blanca, José M. ...
FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
14 years 5 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
IROS
2006
IEEE
96views Robotics» more  IROS 2006»
15 years 8 months ago
Topological Mapping Inspired by Techniques in DNA Sequence Alignment
Abstract— This paper introduces a method of building topological maps using sequences of images and the approximate string matching algorithm, which is commonly used in DNA seque...
Alan M. Zhang, Lindsay Kleeman, R. Andrew Russell