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» A 3D pattern matching algorithm for DNA sequences
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BMCBI
2005
138views more  BMCBI 2005»
15 years 1 months ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...
CVPR
2009
IEEE
16 years 9 months ago
Spatiotemporal Stereo via Spatiotemporal Quadric Element (Stequel) Matching
Spatiotemporal stereo is concerned with recovery of the 3D structure of a dynamically changing scene from a sequence of stereo images. This paper aims at computing temporally coh...
Mikhail Sizintsev, Richard P. Wildes
IPPS
2010
IEEE
14 years 12 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
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BMCBI
2007
139views more  BMCBI 2007»
15 years 2 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
BMCBI
2006
137views more  BMCBI 2006»
15 years 2 months ago
Chaos game representation for comparison of whole genomes
Background: Chaos game representation of genome sequences has been used for visual representation of genome sequence patterns as well as alignment-free comparisons of sequences ba...
Jijoy Joseph, Roschen Sasikumar