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» A 3D pattern matching algorithm for DNA sequences
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CSR
2006
Springer
15 years 5 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
150
Voted
BMCBI
2007
163views more  BMCBI 2007»
15 years 2 months ago
Strainer: software for analysis of population variation in community genomic datasets
Background: Metagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will...
John M. Eppley, Gene W. Tyson, Wayne M. Getz, Jill...
MVA
1998
149views Computer Vision» more  MVA 1998»
15 years 3 months ago
Auto-Calibration of a Rotating and Zooming Camera
We propose a method to calibrate a rotating and zooming camera without 3D pattern, where the internal parameters change frame by frame. First, we show that the calibration is uniq...
Yongduek Seo, Ki-Sang Hong
BMCBI
2008
108views more  BMCBI 2008»
15 years 2 months ago
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
Background: High throughput signature sequencing holds many promises, one of which is the ready identification of in vivo transcription factor binding sites, histone modifications...
David A. Nix, Samir J. Courdy, Kenneth M. Boucher
BMCBI
2005
132views more  BMCBI 2005»
15 years 1 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...