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» A 3D pattern matching algorithm for DNA sequences
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BMCBI
2008
130views more  BMCBI 2008»
15 years 2 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
RECOMB
2004
Springer
16 years 2 months ago
Structured motifs search
In this paper we describe an algorithm for the localization of structured models, i.e. sequences of (simple) motifs and distance constraints. It basically combines standard patter...
Alberto Policriti, Nicola Vitacolonna, Michele Mor...
ICVS
2001
Springer
15 years 6 months ago
A Stereo Vision System for Support of Planetary Surface Exploration
In this paper a system will be presented that was developed for ESA for the support of planetary exploration. The system that is sent to the planetary surface consists of a rover a...
Maarten Vergauwen, Marc Pollefeys, Luc J. Van Gool
108
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ISAAC
2004
Springer
115views Algorithms» more  ISAAC 2004»
15 years 7 months ago
Randomized Algorithms for Motif Detection
Motivation: Motif detection for DNA sequences has many important applications in biological studies, e.g., locating binding sites and regulatory signals, and designing genetic prob...
Lusheng Wang, Liang Dong, Hui Fan
130
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IANDC
2008
141views more  IANDC 2008»
15 years 1 months ago
Graph connectivity, partial words, and a theorem of Fine and Wilf
The problem of computing periods in words, or finite sequences of symbols from a finite alphabet, has important applications in several areas including data compression, string se...
Francine Blanchet-Sadri, Deepak Bal, Gautam Sisodi...