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» A 3D pattern matching algorithm for DNA sequences
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NIPS
2004
15 years 1 months ago
Pictorial Structures for Molecular Modeling: Interpreting Density Maps
X-ray crystallography is currently the most common way protein structures are elucidated. One of the most time-consuming steps in the crystallographic process is interpretation of...
Frank DiMaio, Jude W. Shavlik, George N. Phillips
BIOINFORMATICS
2004
83views more  BIOINFORMATICS 2004»
14 years 11 months ago
Haplotypes histories as pathways of recombinations
Motivation: The diversity of a haplotype, represented as a string of polymorphic sites along a DNA sequence, increases exponentially with the number of sites if recombinations are...
Nadia El-Mabrouk, Damian Labuda
RECOMB
2007
Springer
15 years 5 months ago
Nucleosome Occupancy Information Improves de novo Motif Discovery
A complete understanding of transcriptional regulatory processes in the cell requires identification of transcription factor binding sites on a genomewide scale. Unfortunately, th...
Leelavati Narlikar, Raluca Gordân, Alexander...
ICDE
2007
IEEE
123views Database» more  ICDE 2007»
16 years 1 months ago
Stream Monitoring under the Time Warping Distance
The goal of this paper is to monitor numerical streams, and to find subsequences that are similar to a given query sequence, under the DTW (Dynamic Time Warping) distance. Applica...
Yasushi Sakurai, Christos Faloutsos, Masashi Yamam...
STOC
1993
ACM
87views Algorithms» more  STOC 1993»
15 years 3 months ago
How to use expert advice
We analyze algorithms that predict a binary value by combining the predictions of several prediction strategies, called experts. Our analysis is for worst-case situations, i.e., we...
Nicolò Cesa-Bianchi, Yoav Freund, David P. ...