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» A 3D pattern matching algorithm for DNA sequences
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94
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NIPS
2004
15 years 3 months ago
Pictorial Structures for Molecular Modeling: Interpreting Density Maps
X-ray crystallography is currently the most common way protein structures are elucidated. One of the most time-consuming steps in the crystallographic process is interpretation of...
Frank DiMaio, Jude W. Shavlik, George N. Phillips
BIOINFORMATICS
2004
83views more  BIOINFORMATICS 2004»
15 years 1 months ago
Haplotypes histories as pathways of recombinations
Motivation: The diversity of a haplotype, represented as a string of polymorphic sites along a DNA sequence, increases exponentially with the number of sites if recombinations are...
Nadia El-Mabrouk, Damian Labuda
145
Voted
RECOMB
2007
Springer
15 years 8 months ago
Nucleosome Occupancy Information Improves de novo Motif Discovery
A complete understanding of transcriptional regulatory processes in the cell requires identification of transcription factor binding sites on a genomewide scale. Unfortunately, th...
Leelavati Narlikar, Raluca Gordân, Alexander...
ICDE
2007
IEEE
123views Database» more  ICDE 2007»
16 years 3 months ago
Stream Monitoring under the Time Warping Distance
The goal of this paper is to monitor numerical streams, and to find subsequences that are similar to a given query sequence, under the DTW (Dynamic Time Warping) distance. Applica...
Yasushi Sakurai, Christos Faloutsos, Masashi Yamam...
STOC
1993
ACM
87views Algorithms» more  STOC 1993»
15 years 6 months ago
How to use expert advice
We analyze algorithms that predict a binary value by combining the predictions of several prediction strategies, called experts. Our analysis is for worst-case situations, i.e., we...
Nicolò Cesa-Bianchi, Yoav Freund, David P. ...