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BMCBI
2006
107views more  BMCBI 2006»
14 years 9 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
BMCBI
2006
160views more  BMCBI 2006»
14 years 9 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
IANDC
2008
114views more  IANDC 2008»
14 years 9 months ago
Generalizing the Paige-Tarjan algorithm by abstract interpretation
act Interpretation Francesco Ranzato and Francesco Tapparo Dipartimento di Matematica Pura ed Applicata, Universit`a di Padova, Italy The Paige and Tarjan algorithm (PT) for comp...
Francesco Ranzato, Francesco Tapparo
BMCBI
2006
76views more  BMCBI 2006»
14 years 9 months ago
Coloring the Mu transpososome
Background: Tangle analysis has been applied successfully to study proteins which bind two segments of DNA and can knot and link circular DNA. We show how tangle analysis can be e...
Isabel K. Darcy, Jeff Chang, Nathan Druivenga, Col...
BMCBI
2006
174views more  BMCBI 2006»
14 years 9 months ago
Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration
Background: The automation of many common molecular biology techniques has resulted in the accumulation of vast quantities of experimental data. One of the major challenges now fa...
Jianghui Xiong, Simon Rayner, Kunyi Luo, Yinghui L...