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BMCBI
2004
208views more  BMCBI 2004»
15 years 6 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
ICSE
2010
IEEE-ACM
15 years 11 months ago
Using twinning to adapt programs to alternative APIs
We describe twinning and its applications to adapting programs to alternative APIs. Twinning is a simple technique that allows programmers to specify a class of program changes, i...
Marius Nita, David Notkin
BMCBI
2006
121views more  BMCBI 2006»
15 years 6 months ago
Splice site identification using probabilistic parameters and SVM classification
Background: Recent advances and automation in DNA sequencing technology has created a vast amount of DNA sequence data. This increasing growth of sequence data demands better and ...
A. K. M. A. Baten, Bill C. H. Chang, Saman K. Halg...
ICIP
2005
IEEE
16 years 8 months ago
Approximate separable 3D anisotropic Gauss filter
Anisotropic Gaussian filters are useful for adaptive smoothing and feature extraction. In our application, micro - tomographic images of fibers were smoothed by anisotropic Gaussi...
Oliver Wirjadi, Thomas M. Breuel
PVM
2007
Springer
16 years 12 days ago
Extending the MPI-2 Generalized Request Interface
Abstract. The MPI-2 standard added a new feature to MPI called generalized requests. Generalized requests allow users to add new nonblocking operations to MPI while still using man...
Robert Latham, William Gropp, Robert B. Ross, Raje...