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» A Case for Codons in Evolutionary Algorithms
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BMCBI
2006
115views more  BMCBI 2006»
14 years 10 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
BMCBI
2005
92views more  BMCBI 2005»
14 years 9 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
GECCO
2007
Springer
235views Optimization» more  GECCO 2007»
15 years 4 months ago
Expensive optimization, uncertain environment: an EA-based solution
Real life optimization problems often require finding optimal solution to complex high dimensional, multimodal problems involving computationally very expensive fitness function e...
Maumita Bhattacharya
COCOON
2006
Springer
15 years 1 months ago
Reconciling Gene Trees with Apparent Polytomies
We consider the problem of reconciling gene trees with a species tree based on the widely accepted Gene Duplication model from Goodman et al. Current algorithms that solve this pro...
Wen-Chieh Chang 0002, Oliver Eulenstein
GECCO
2008
Springer
153views Optimization» more  GECCO 2008»
14 years 11 months ago
G-Metric: an M-ary quality indicator for the evaluation of non-dominated sets
An open problem in multiobjective optimization using the Pareto optimality criteria, is how to evaluate the performance of different evolutionary algorithms that solve multi– o...
Giovanni Lizárraga Lizárraga, Arturo...