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BMCBI
2006
114views more  BMCBI 2006»
15 years 3 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
JCB
2006
215views more  JCB 2006»
15 years 3 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
135
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SIGMOD
2004
ACM
150views Database» more  SIGMOD 2004»
16 years 4 months ago
When one Sample is not Enough: Improving Text Database Selection Using Shrinkage
Database selection is an important step when searching over large numbers of distributed text databases. The database selection task relies on statistical summaries of the databas...
Panagiotis G. Ipeirotis, Luis Gravano
BMCBI
2010
132views more  BMCBI 2010»
15 years 4 months ago
Error margin analysis for feature gene extraction
Background: Feature gene extraction is a fundamental issue in microarray-based biomarker discovery. It is normally treated as an optimization problem of finding the best predictiv...
Chi Kin Chow, Hai Long Zhu, Jessica Lacy, Winston ...
142
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BMCBI
2007
217views more  BMCBI 2007»
15 years 3 months ago
On consensus biomarker selection
Background: Recent development of mass spectrometry technology enabled the analysis of complex peptide mixtures. A lot of effort is currently devoted to the identification of biom...
Janusz Dutkowski, Anna Gambin