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» A Comparison of RESTART Implementations
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BMCBI
2010
118views more  BMCBI 2010»
14 years 10 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
BMCBI
2007
156views more  BMCBI 2007»
14 years 10 months ago
Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...
BMCBI
2007
174views more  BMCBI 2007»
14 years 10 months ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...
JSAT
2006
134views more  JSAT 2006»
14 years 10 months ago
Pueblo: A Hybrid Pseudo-Boolean SAT Solver
This paper introduces a new hybrid method for efficiently integrating Pseudo-Boolean (PB) constraints into generic SAT solvers in order to solve PB satisfiability and optimization...
Hossein M. Sheini, Karem A. Sakallah
BMCBI
2005
112views more  BMCBI 2005»
14 years 10 months ago
Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds
Background: Gene expression studies increasingly compare expression responses between different experimental backgrounds (genetic, physiological, or phylogenetic). By focusing on ...
Rainer Breitling, Patrick Armengaud, Anna Amtmann