We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
Background: To meet the needs of gene annotation for newly sequenced organisms, optimized spaced seeds can be implemented into cross-species sequence alignment programs to accurat...
ct This paper discusses the practical implementation of a novel security tool termed SIMPL system, which was introduced in [1]. SIMPL systems can be regarded as a public key versio...
BLASTn is a tool universally used by biologists to identify similarities between nucleotide based biological genome sequences. This report describes an FPGA based hardware impleme...
Abstract. Writing e cient iterative solvers for irregular, sparse matrices in HPF is hard. The locality in the computations is unclear, and for e ciency we use storage schemes that...